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@Workflomics

Workflomics

Projects tailored for automated creation and benchmarking of workflows in life sciences .
README.md

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Hi, welcome to the Workflomics project! 👋

Workflomics is a platform used to help bioinformaticians to automatically generate and compare computational workflows!

The following video explains Workflomics in 10 minutes:

Workflomics - Youtube video

Useful links:

Architecture

architecture_workflomics
Architecture Overview of the Workflomics Platform.

Pinned

  1. workflomics-frontend workflomics-frontend Public

    Front end of the Workflomics - workflow benchmarking platform.

    TypeScript 3 2

  2. containers containers Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 2

  3. domain-annotations domain-annotations Public

    Annotations of scientific domains available at the Workflomics platform

    Common Workflow Language

  4. workflomics-benchmarker workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python 1

  5. workflomics-readthedocs workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    1

  6. DemoKit DemoKit Public

    Data and instructions needed to run locally the Workflomics project

    Common Workflow Language 1

Repositories

Showing 10 of 11 repositories
  • containers Public

    Containers to package the required sofware for executing CWL workflows

    Common Workflow Language 0 Apache-2.0 2 28 1 Updated May 9, 2024
  • workflomics-frontend Public

    Front end of the Workflomics - workflow benchmarking platform.

    TypeScript 3 Apache-2.0 2 17 (2 issues need help) 1 Updated May 8, 2024
  • workflomics-benchmarker Public

    Library used to execute workflows (in CWL) and benchmark them as part of the Workflomics.

    Python 0 Apache-2.0 1 2 1 Updated May 8, 2024
  • .github Public
    0 0 0 0 Updated May 8, 2024
  • workflomics-readthedocs Public

    The repository is used to provide detailed documentation on how to use the Workflomics web interface and its ecosystem.

    0 1 1 0 Updated May 7, 2024
  • workflomics-QCmetric Public

    Library for citation network based quality control of autogenerated workflows.

    Jupyter Notebook 0 1 1 0 Updated May 7, 2024
  • domain-annotations Public

    Annotations of scientific domains available at the Workflomics platform

    Common Workflow Language 0 Apache-2.0 0 3 0 Updated May 1, 2024
  • biohackathon_2023 Public

    Project #4 in BioHackathon 2023 (Barcelona)

    TeX 0 0 0 0 Updated Dec 18, 2023
  • designtime-bench-service Public archive

    RESTful API service for design-time benchmarking of workflows. The service focuses on aggregating tool specific benchmarks (available in bio.tools and OpenEBench).

    JavaScript 0 Apache-2.0 0 0 0 Updated Oct 23, 2023
  • DemoKit Public

    Data and instructions needed to run locally the Workflomics project

    Common Workflow Language 0 Apache-2.0 1 0 1 Updated Aug 29, 2023
View all repositories

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